Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs78797390 chr6:15210373 A/T 0.000123 131 37.53 45.93 NA KM Plot
TGCT rs78817793 chr2:29519631 C/T 0 134 43.68 24.23 0.57 KM Plot
TGCT rs78826827 chr2:3487322 A/G 2.43E-5 131 40.57 66.17 25.32 KM Plot
TGCT rs78934412 chr6:28419202 T/G 0 133 46.07 25.38 0.57 KM Plot
TGCT rs79045902 chr7:127147127 A/G 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs7921734 chr10:8628416 T/C 3.88E-7 133 43.68 33.53 17.58 KM Plot
TGCT rs7940103 chr11:67343157 T/A 2.1E-8 128 41.97 105.68 20.6 KM Plot
TGCT rs7943062 chr11:113817286 C/T 8.71E-9 134 46.3 36.12 10.52 KM Plot
TGCT rs79436018 chr7:127694032 T/C 5.66E-5 134 46.07 37.53 9.77 KM Plot
TGCT rs79437914 chr16:67578143 C/A 0 133 46.07 24.1 0.57 KM Plot
TGCT rs7954897 chr12:107046220 C/T 3.53E-8 132 48.87 45.1 27.93 KM Plot
TGCT rs7958469 chr12:107052620 G/A 0.000103 134 48.87 38.2 28.8 KM Plot
TGCT rs7959062 chr12:107107334 G/T 5.07E-5 134 46.77 45.1 28.67 KM Plot
TGCT rs79631436 chr16:67728369 T/A 1.53E-7 132 45.83 22.4 73.72 KM Plot
TGCT rs7966564 chr12:107142681 G/A 3.98E-12 134 41.97 49.93 24.27 KM Plot